If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ), 'gf_id' => 'HOM05D000929', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000929' ), 'data_identifier' => 'HOM05D000929', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000929', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '648', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26810' => 'bna', 'A01p29050' => 'bna', 'A01p29070' => 'bna', 'A07p13710' => 'bna', 'A09p34650' => 'bna', 'A09p39530' => 'bna', 'A09p40930' => 'bna', 'A10p18250' => 'bna', 'Aa31LG1G12920' => 'aar', 'Aa31LG2G10170' => 'aar', 'Aa31LG4G14280' => 'aar', 'Aa31LG7G7770' => 'aar', 'Aa31LG9G15770' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1544' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3572' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3846' => 'aag', 'Actinidia00022' => 'ach', 'Actinidia01247' => 'ach', 'Actinidia01711' => 'ach', 'Actinidia03200' => 'ach', 'Actinidia03683' => 'ach', 'Actinidia07205' => 'ach', 'Actinidia24174' => 'ach', 'Actinidia27778' => 'ach', 'Actinidia27779' => 'ach', 'Actinidia32793' => 'ach', 'Ah.01g016700' => 'amhyb', 'Ah.02g115480' => 'amhyb', 'AL1G37650' => 'aly', 'AL1G45800' => 'aly', 'AL2G16620' => 'aly', 'AL6G33770' => 'aly', 'AL6G33800' => 'aly', 'AL6G47720' => 'aly', 'Aqoxy2G01493' => 'aox', 'Aqoxy2G03914' => 'aox', 'Aqoxy3G00960' => 'aox', 'Aqoxy5G02907' => 'aox', 'Aqoxy5G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.095X5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0K9FD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RZB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C95Z0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9AZ7P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HVM0CV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFAW9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MKS3V3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MS8XLG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SC897I' => 'arhy', 'AT1G23900' => 'ath', 'AT1G23935' => 'ath', 'AT1G31730' => 'ath', 'AT1G60070' => 'ath', 'AT5G22770' => 'ath', 'AT5G22780' => 'ath', 'ATR0069G035' => 'atr', 'ATR0820G043' => 'atr', 'ATR1149G054' => 'atr', 'Atru.chr11.1995' => 'acertr', 'Atru.chr3.3401' => 'acertr', 'Atru.chr3.3402' => 'acertr', 'Atru.chr8.2597' => 'acertr', 'Atru.chr8.2598' => 'acertr', 'Atru.chr8.2611' => 'acertr', 'Atru.chr8.2670' => 'acertr', 'AUR62005349' => 'cqu', 'AUR62014001' => 'cqu', 'AUR62023959' => 'cqu', 'AUR62030758' => 'cqu', 'AUR62030759' => 'cqu', 'AUR62031755' => 'cqu', 'AUR62036405' => 'cqu', 'BcaB03g14129' => 'bca', 'BcaB04g20249' => 'bca', 'BcaB07g32364' => 'bca', 'BcaB07g32366' => 'bca', 'BcaB07g32818' => 'bca', 'BcaC05g26293' => 'bca', 'BcaC05g26444' => 'bca', 'BcaC05g26656' => 'bca', 'BcaC05g27184' => 'bca', 'BcaC06g35060' => 'bca', 'BcaC07g39220' => 'bca', 'BcaC09g49434' => 'bca', 'BcaC09g49654' => 'bca', 'BNapus_Darmor_BZH_scaffold_109p00120' => 'bna', 'BolC1t03387H' => 'bol', 'BolC1t03636H' => 'bol', 'BolC5t31007H' => 'bol', 'BolC5t31222H' => 'bol', 'BolC5t31815H' => 'bol', 'BolC7t42538H' => 'bol', 'BolC8t49861H' => 'bol', 'BolC9t58261H' => 'bol', 'BraA01t02610Z' => 'bra', 'BraA01t02988Z' => 'bra', 'BraA01t02991Z' => 'bra', 'BraA07t29122Z' => 'bra', 'BraA09t38999Z' => 'bra', 'BraA09t39452Z' => 'bra', 'BraA09t39583Z' => 'bra', 'BraA10t43900Z' => 'bra', 'C01p34170' => 'bna', 'C01p36770' => 'bna', 'C01p36780' => 'bna', 'C05p23090' => 'bna', 'C05p24930' => 'bna', 'C05p30850' => 'bna', 'C07p20170' => 'bna', 'C08p22150' => 'bna', 'C09p53880' => 'bna', 'CAN.G1082.5' => 'can', 'CAN.G1082.6' => 'can', 'CAN.G205.10' => 'can', 'CAN.G644.41' => 'can', 'CAN.G919.3' => 'can', 'CAN.G998.9' => 'can', 'CANSAT01G0657' => 'cansat', 'CANSAT35G1067' => 'cansat', 'CANSAT64G1824' => 'cansat', 'CARHR024300' => 'chi', 'CARHR031030' => 'chi', 'CARHR052880' => 'chi', 'CARHR151250' => 'chi', 'CARHR190820' => 'chi', 'Carub.0001s2339' => 'cru', 'Carub.0001s3003' => 'cru', 'Carub.0002s0518' => 'cru', 'Carub.0006s2048' => 'cru', 'Carub.0006s2049' => 'cru', 'Ca_01687_v3' => 'car', 'Ca_04610_v3' => 'car', 'Ca_22458_v3' => 'car', 'Ca_22750_v3' => 'car', 'Ca_22752_v3' => 'car', 'Ca_22753_v3' => 'car', 'Ca_22755_v3' => 'car', 'Ca_28507_v3' => 'car', 'Ca_29648_v3' => 'car', 'Ca_29760_v3' => 'car', 'CBR_g29503' => 'cbr', 'CBR_g31532' => 'cbr', 'CBR_g41578' => 'cbr', 'Cc01_g09940' => 'ccan', 'Cc08_g05960' => 'ccan', 'Cc11_g14450' => 'ccan', 'CDE01G0215' => 'cde', 'CDE02G0944' => 'cde', 'CDE02G1294' => 'cde', 'CDE02G4539' => 'cde', 'CDE04G0670' => 'cde', 'CDE06G0186' => 'cde', 'CDE06G2377' => 'cde', 'Cfa009113' => 'cfa', 'Cfa010100' => 'cfa', 'Cfa012306' => 'cfa', 'Cfa025901' => 'cfa', 'Cfa026228' => 'cfa', 'Ciclev10010995m.g' => 'ccl', 'Ciclev10027737m.g' => 'ccl', 'Ciclev10030683m.g' => 'ccl', 'CiPaw.05G147600' => 'cil', 'CiPaw.06G073700' => 'cil', 'CiPaw.11G074100' => 'cil', 'CiPaw.12G055500' => 'cil', 'CiPaw.13G142000' => 'cil', 'CiPaw.14G104400' => 'cil', 'ClCG02G021820' => 'cla', 'ClCG05G025180' => 'cla', 'ClCG11G016100' => 'cla', 'COL.COLO4_16747' => 'col', 'COL.COLO4_18716' => 'col', 'COL.COLO4_18745' => 'col', 'COL.COLO4_18758' => 'col', 'COL.COLO4_19274' => 'col', 'COL.COLO4_19524' => 'col', 'Cpa.g.c45198' => 'cpa', 'Cpa.g.sc1052.1' => 'cpa', 'Cpa.g.sc24.17' => 'cpa', 'Cpa.g.sc47.59' => 'cpa', 'Cpa.g.sc69.3' => 'cpa', 'Cpa.g.sc69.4' => 'cpa', 'Cre06.g310000' => 'cre', 'Cre12.g488850' => 'cre', 'Cre16.g676650' => 'cre', 'CsaV3_4G014930' => 'csa', 'CsaV3_5G031710' => 'csa', 'CsaV3_6G014610' => 'csa', 'CsaV3_UNG237520' => 'csa', 'CSS0004620' => 'camsi', 'CSS0015451' => 'camsi', 'CSS0016839' => 'camsi', 'CSS0022003' => 'camsi', 'CSS0034893' => 'camsi', 'CSS0041991' => 'camsi', 'CSS0042322' => 'camsi', 'CSS0043960' => 'camsi', 'CSS0044632' => 'camsi', 'DCAR_004536' => 'dca', 'DCAR_015485' => 'dca', 'DCAR_018747' => 'dca', 'DCAR_024137' => 'dca', 'DCAR_024138' => 'dca', 'DCAR_031089' => 'dca', 'Dinv07357' => 'din', 'Dinv09632' => 'din', 'Dinv12535' => 'din', 'Dinv24884' => 'din', 'Dinv29411' => 'din', 'Dinv31017' => 'din', 'Dinv37432' => 'din', 'Dinv41800' => 'din', 'Duzib068G0752' => 'dzi', 'Duzib150G0964' => 'dzi', 'Duzib168G0512' => 'dzi', 'Duzib170G1132' => 'dzi', 'Duzib205G0211' => 'dzi', 'Duzib251G0010' => 'dzi', 'Duzib268G0481' => 'dzi', 'ECA233G5521' => 'eca', 'ECA234G1358' => 'eca', 'ECA238G1224' => 'eca', 'ECA240G1531' => 'eca', 'ECA246G2227' => 'eca', 'ECA246G2658' => 'eca', 'EL10Ac5g12482' => 'bvu', 'EL10Ac6g13647' => 'bvu', 'EL10Ac6g13782' => 'bvu', 'EL10Ac9g21056' => 'bvu', 'Eucgr.B03952' => 'egr', 'Eucgr.E01151' => 'egr', 'Eucgr.J00415' => 'egr', 'FAN04G0569' => 'fan', 'FAN07G2647' => 'fan', 'FAN08G3498' => 'fan', 'FAN11G0593' => 'fan', 'FAN12G0668' => 'fan', 'FAN13G0018' => 'fan', 'FAN16G3173' => 'fan', 'FAN17G2555' => 'fan', 'FAN18G0585' => 'fan', 'FAN18G2918' => 'fan', 'FAN18G3633' => 'fan', 'FAN18G4309' => 'fan', 'FAN21G3154' => 'fan', 'FAN22G0046' => 'fan', 'FAN25G1715' => 'fan', 'FvH4_3g30090' => 'fve', 'FvH4_4g34830' => 'fve', 'FvH4_5g19200' => 'fve', 'FvH4_5g25110' => 'fve', 'Glyma.01G032100' => 'gma', 'Glyma.01G153200' => 'gma', 'Glyma.02G033300' => 'gma', 'Glyma.08G289100' => 'gma', 'Glyma.09G218500' => 'gma', 'Glyma.12G084167' => 'gma', 'Glyma.12G084233' => 'gma', 'Glyma.12G180600' => 'gma', 'Glyma.13G320200' => 'gma', 'Glyma.16G076500' => 'gma', 'Glyma.16G109200' => 'gma', 'Glyma.18G135351' => 'gma', 'Glyma.18G135400' => 'gma', 'Gohir.A01G141400' => 'ghi', 'Gohir.A03G141000' => 'ghi', 'Gohir.A08G003300' => 'ghi', 'Gohir.A08G148700' => 'ghi', 'Gohir.A09G092000' => 'ghi', 'Gohir.A12G052100' => 'ghi', 'Gohir.A12G201100' => 'ghi', 'Gohir.D01G132800' => 'ghi', 'Gohir.D02G163900' => 'ghi', 'Gohir.D08G013700' => 'ghi', 'Gohir.D08G169800' => 'ghi', 'Gohir.D09G091900' => 'ghi', 'Gohir.D12G050500' => 'ghi', 'Gohir.D12G203900' => 'ghi', 'Gorai.002G164400' => 'gra', 'Gorai.004G008000' => 'gra', 'Gorai.004G177000' => 'gra', 'Gorai.005G183900' => 'gra', 'Gorai.006G108500' => 'gra', 'Gorai.008G053700' => 'gra', 'Gorai.008G218700' => 'gra', 'GSVIVG01020209001' => 'vvi', 'GSVIVG01031413001' => 'vvi', 'GSVIVG01036887001' => 'vvi', 'HanXRQChr03g0084681' => 'han', 'HanXRQChr10g0316861' => 'han', 'HanXRQChr12g0371361' => 'han', 'HanXRQChr12g0383371' => 'han', 'HanXRQChr13g0396891' => 'han', 'HanXRQChr13g0412771' => 'han', 'HanXRQChr14g0451931' => 'han', 'HanXRQChr16g0507691' => 'han', 'HanXRQChr17g0570221' => 'han', 'Haze_08424' => 'cav', 'Haze_12151' => 'cav', 'Haze_23466' => 'cav', 'Haze_26819' => 'cav', 'Haze_26830' => 'cav', 'Hma1.2p1_0051F.1_g029810' => 'hma', 'Hma1.2p1_0140F.1_g063590' => 'hma', 'Hma1.2p1_0262F.1_g105380' => 'hma', 'Hma1.2p1_0867F.1_g230390' => 'hma', 'Hma1.2p1_1655F.1_g295990' => 'hma', 'Hma1.2p1_1991F.1_g310190' => 'hma', 'HPP92_006225' => 'vpl', 'HPP92_023816' => 'vpl', 'HPP92_027615' => 'vpl', 'HPP92_027616' => 'vpl', 'HPP92_028038' => 'vpl', 'Hund00800' => 'sun', 'Hund05973' => 'sun', 'Hund10896' => 'sun', 'Hund14936' => 'sun', 'Hund25335' => 'sun', 'Lalb_Chr05g0215171' => 'lal', 'Lalb_Chr05g0217021' => 'lal', 'Lalb_Chr05g0227851' => 'lal', 'Lalb_Chr05g0227871' => 'lal', 'Lalb_Chr09g0325031' => 'lal', 'Lalb_Chr09g0325041' => 'lal', 'Lalb_Chr09g0325051' => 'lal', 'Lalb_Chr09g0326431' => 'lal', 'Lalb_Chr14g0374281' => 'lal', 'Lalb_Chr14g0374291' => 'lal', 'Lalb_Chr16g0380421' => 'lal', 'Lalb_Chr16g0380431' => 'lal', 'Lalb_Chr16g0382361' => 'lal', 'Lalb_Chr16g0382371' => 'lal', 'Lalb_Chr16g0391781' => 'lal', 'Lalb_Chr22g0350571' => 'lal', 'Lalb_Chr24g0395091' => 'lal', 'Lj1A219G36' => 'lonja', 'Lj2C996G14' => 'lonja', 'Lj2g0010189' => 'lja', 'Lj3C1051G4' => 'lonja', 'Lj3g0021930' => 'lja', 'Lj4g0001871' => 'lja', 'Lj6C803G6' => 'lonja', 'Lj8C361G1' => 'lonja', 'Lsat_1_v5_gn_1_115680' => 'lsa', 'Lsat_1_v5_gn_1_121920' => 'lsa', 'Lsat_1_v5_gn_1_124901' => 'lsa', 'Lsat_1_v5_gn_1_23361' => 'lsa', 'Lsat_1_v5_gn_2_16661' => 'lsa', 'Lsat_1_v5_gn_2_30601' => 'lsa', 'Lsat_1_v5_gn_2_96621' => 'lsa', 'Lsat_1_v5_gn_3_20441' => 'lsa', 'Lsat_1_v5_gn_3_77260' => 'lsa', 'Lsat_1_v5_gn_4_7040' => 'lsa', 'Lsat_1_v5_gn_4_7061' => 'lsa', 'Lsat_1_v5_gn_5_109620' => 'lsa', 'Lsat_1_v5_gn_5_158920' => 'lsa', 'Lsat_1_v5_gn_5_175420' => 'lsa', 'Lsat_1_v5_gn_5_188721' => 'lsa', 'Lsat_1_v5_gn_5_22660' => 'lsa', 'Lsat_1_v5_gn_5_4720' => 'lsa', 'Lsat_1_v5_gn_6_16240' => 'lsa', 'Lsat_1_v5_gn_6_17021' => 'lsa', 'Lsat_1_v5_gn_6_18541' => 'lsa', 'Lsat_1_v5_gn_6_42741' => 'lsa', 'Lsat_1_v5_gn_6_77000' => 'lsa', 'Lsat_1_v5_gn_7_17000' => 'lsa', 'Lsat_1_v5_gn_7_60580' => 'lsa', 'Manes.01G198500' => 'mes', 'Manes.04G010400' => 'mes', 'Manes.05G088300' => 'mes', 'Manes.11G155700' => 'mes', 'Manes.17G001200' => 'mes', 'Mapoly0011s0004' => 'mpo', 'Mapoly0011s0005' => 'mpo', 'Mapoly0072s0011' => 'mpo', 'Mapoly0130s0022' => 'mpo', 'MBI07_g15664_MAGBIO' => 'mbi', 'MBI07_g37209_MAGBIO' => 'mbi', 'MBI17_g28600_MAGBIO' => 'mbi', 'MBI17_g45825_MAGBIO' => 'mbi', 'MCO03G372' => 'mco', 'MCO16G250' => 'mco', 'MCO16G352' => 'mco', 'MD02G1267100' => 'mdo', 'MD03G1132700' => 'mdo', 'MD07G1052000' => 'mdo', 'MD11G1155000' => 'mdo', 'MD13G1089300' => 'mdo', 'MD16G1089500' => 'mdo', 'Medtr2g084610' => 'mtr', 'Medtr5g034780' => 'mtr', 'Medtr8g063690' => 'mtr', 'Medtr8g072250' => 'mtr', 'MELO3C010526.2' => 'cme', 'MELO3C012011.2' => 'cme', 'MELO3C021463.2' => 'cme', 'Migut.A00470' => 'egut', 'Migut.D02325' => 'egut', 'Migut.E00152' => 'egut', 'Migut.L01430' => 'egut', 'Migut.O00583' => 'egut', 'MSTRG.11858' => 'ama', 'MSTRG.13916' => 'ama', 'MSTRG.25749' => 'ama', 'MSTRG.606' => 'ama', 'MSTRG.7881' => 'ama', 'Nitab4.5_0000031g0020' => 'nta', 'Nitab4.5_0000052g0340' => 'nta', 'Nitab4.5_0000442g0230' => 'nta', 'Nitab4.5_0000925g0040' => 'nta', 'Nitab4.5_0000986g0030' => 'nta', 'Nitab4.5_0002571g0040' => 'nta', 'Nitab4.5_0003470g0070' => 'nta', 'Nitab4.5_0004926g0020' => 'nta', 'Nitab4.5_0007507g0010' => 'nta', 'Nitab4.5_0008887g0020' => 'nta', 'Nn1g08153' => 'nnu', 'Nn2g13966' => 'nnu', 'Nn3g16925' => 'nnu', 'Nn4g22838' => 'nnu', 'Oeu001748.1' => 'oeu', 'Oeu008377.1' => 'oeu', 'Oeu010644.1' => 'oeu', 'Oeu023055.1' => 'oeu', 'Oeu023056.3' => 'oeu', 'Oeu027459.1' => 'oeu', 'Oeu039476.1' => 'oeu', 'Oeu046773.1' => 'oeu', 'Os01g0916200' => 'osa', 'Os02g0805000' => 'osa', 'Os03g0112101' => 'osa', 'Os03g0112400' => 'osa', 'Os06g0167100' => 'osa', 'Peaxi162Scf00012g00008' => 'pax', 'Peaxi162Scf00053g00316' => 'pax', 'Peaxi162Scf00157g00039' => 'pax', 'Peaxi162Scf00421g00122' => 'pax', 'Peaxi162Scf00789g00218' => 'pax', 'PGR031G1573' => 'pgr', 'PGR119G0792' => 'pgr', 'PGR119G1498' => 'pgr', 'PGSC0003DMG400001953' => 'stu', 'PGSC0003DMG400004116' => 'stu', 'Phvul.002G072600' => 'pvu', 'Phvul.002G122300' => 'pvu', 'Phvul.003G053300' => 'pvu', 'Phvul.005G128200' => 'pvu', 'Potri.004G189700' => 'ptr', 'Potri.004G235200' => 'ptr', 'Potri.006G092800' => 'ptr', 'Potri.009G150300' => 'ptr', 'Potri.016G104700' => 'ptr', 'Pp3c12_14810' => 'ppa', 'Pp3c12_18560' => 'ppa', 'Pp3c12_8940' => 'ppa', 'Pp3c15_650' => 'ppa', 'Pp3c17_2250' => 'ppa', 'Pp3c17_4870' => 'ppa', 'Pp3c17_6470' => 'ppa', 'Pp3c1_29560' => 'ppa', 'Pp3c26_590' => 'ppa', 'Pp3c8_5790' => 'ppa', 'PRCOL_00000608' => 'pco', 'PRCOL_00002053' => 'pco', 'PRCOL_00005986' => 'pco', 'Prupe.1G256500' => 'ppe', 'Prupe.2G018400' => 'ppe', 'Prupe.2G055800' => 'ppe', 'Prupe.2G056200' => 'ppe', 'Prupe.2G057700' => 'ppe', 'Prupe.2G066700' => 'ppe', 'Prupe.2G066800' => 'ppe', 'Prupe.2G067900' => 'ppe', 'Prupe.2G068200' => 'ppe', 'Prupe.6G117500' => 'ppe', 'Psat0s2277g0040' => 'psa', 'Psat0s3732g0120' => 'psa', 'Psat0ss4737g0120' => 'psa', 'Psat1g032200' => 'psa', 'Psat1g032240' => 'psa', 'Psat2g069560' => 'psa', 'Psat2g086680' => 'psa', 'Psat2g105480' => 'psa', 'Psat4g108000' => 'psa', 'Psat4g127600' => 'psa', 'Psat4g195400' => 'psa', 'Psat5g219760' => 'psa', 'Psat5g254120' => 'psa', 'PSO017G4228' => 'pso', 'PSO063G0460' => 'pso', 'PSO063G4361' => 'pso', 'PSO339G3653' => 'pso', 'PSO384G2211' => 'pso', 'PSO832G0605' => 'pso', 'QL01p014018' => 'qlo', 'QL03p061898' => 'qlo', 'QL12p003602' => 'qlo', 'QL93p0143_0032' => 'qlo', 'RcHm_v2.0_Chr4g0407221' => 'rch', 'RcHm_v2.0_Chr4g0408051' => 'rch', 'RcHm_v2.0_Chr4g0408061' => 'rch', 'RcHm_v2.0_Chr4g0444171' => 'rch', 'RcHm_v2.0_Chr5g0055751' => 'rch', 'RcHm_v2.0_Chr7g0215311' => 'rch', 'Rhsim01G0209300' => 'rsi', 'Rhsim11G0037600' => 'rsi', 'Rhsim11G0037700' => 'rsi', 'Rhsim12G0047900' => 'rsi', 'Rhsim13G0104500' => 'rsi', 'Sabra01G0179900' => 'sbr', 'Sabra04G0128300' => 'sbr', 'Sabra06G0070500' => 'sbr', 'Sabra09G0119000' => 'sbr', 'SalBow2G0004' => 'sbo', 'SalBow2G3165' => 'sbo', 'SalBow4G0955' => 'sbo', 'SalBow6G6633' => 'sbo', 'SalBow8G4564' => 'sbo', 'Sc04g0009010' => 'sci', 'Sc11g0001280' => 'sci', 'Sc11g0001290' => 'sci', 'Sc21g0004640' => 'sci', 'Sc22g0002840' => 'sci', 'Sed0000238' => 'sed', 'Sed0008575' => 'sed', 'Sed0009259' => 'sed', 'Sed0019322' => 'sed', 'Sed0022852' => 'sed', 'Sed0024593' => 'sed', 'SEGI_06409' => 'sgi', 'SEGI_07107' => 'sgi', 'SEGI_10873' => 'sgi', 'SEGI_11417' => 'sgi', 'SEGI_14181' => 'sgi', 'SEGI_17793' => 'sgi', 'SEGI_18046' => 'sgi', 'SEGI_21369' => 'sgi', 'SEGI_23094' => 'sgi', 'SEGI_27155' => 'sgi', 'SEGI_27215' => 'sgi', 'SEGI_27871' => 'sgi', 'SEGI_28883' => 'sgi', 'SEGI_29219' => 'sgi', 'SEGI_30759' => 'sgi', 'SEGI_30997' => 'sgi', 'SEGI_31789' => 'sgi', 'SEGI_32782' => 'sgi', 'SEGI_38591' => 'sgi', 'SEGI_41236' => 'sgi', 'SGA_v2.0_scaffold165G38266' => 'sas', 'SGA_v2.0_scaffold193G40716' => 'sas', 'SGA_v2.0_scaffold27G11598' => 'sas', 'SGA_v2.0_scaffold75G24904' => 'sas', 'SGA_v2.0_scaffold87G27014' => 'sas', 'SGA_v2.0_scaffold89G27371' => 'sas', 'SGA_v2.0_scaffold96G29109' => 'sas', 'SHI06141' => 'shi', 'SHI06142' => 'shi', 'SHI27107' => 'shi', 'SHI27108' => 'shi', 'SHI27109' => 'shi', 'SHI32765' => 'shi', 'SMO117G0056' => 'smo', 'SMO203G0076' => 'smo', 'SMO347G0230' => 'smo', 'SMO353G0315' => 'smo', 'Solyc04g025870.4' => 'sly', 'Solyc05g005780.3' => 'sly', 'Solyc06g074650.3' => 'sly', 'Solyc08g075310.4' => 'sly', 'Solyc09g056222.1' => 'sly', 'Solyc10g075111.1' => 'sly', 'Solyc11g066770.3' => 'sly', 'Sopen04g013480' => 'spe', 'Sopen05g001780' => 'spe', 'Sopen06g031070' => 'spe', 'Sopen08g023910' => 'spe', 'Sopen11g026490' => 'spe', 'Sp1g21250' => 'spa', 'Sp1g27400' => 'spa', 'Sp2g04530' => 'spa', 'Sp5g15820' => 'spa', 'Sp6g22650' => 'spa', 'TAR362G0882' => 'tar', 'TAR371G0396' => 'tar', 'TAR374G1447' => 'tar', 'TAR622G1265' => 'tar', 'TAR629G2238' => 'tar', 'TAR633G0080' => 'tar', 'TAR636G1238' => 'tar', 'TAR636G3540' => 'tar', 'TAR636G3579' => 'tar', 'THA.LOC104798531' => 'tha', 'THA.LOC104799529' => 'tha', 'THA.LOC104810893' => 'tha', 'THA.LOC104814388' => 'tha', 'THA.LOC104814807' => 'tha', 'THA.LOC104819479' => 'tha', 'THA.LOC104822131' => 'tha', 'Thecc.02G246200' => 'tca', 'Thecc.03G320400' => 'tca', 'Thecc.09G293300' => 'tca', 'Thhalv10006719m.g' => 'esa', 'Thhalv10006767m.g' => 'esa', 'Thhalv10012556m.g' => 'esa', 'Thhalv10023264m.g' => 'esa', 'TPR.G14264' => 'tpr', 'TPR.G29172' => 'tpr', 'TPR.G29173' => 'tpr', 'TPR.G31964' => 'tpr', 'TPR.G32382' => 'tpr', 'TPR.G39942' => 'tpr', 'TWI18G0795' => 'twi', 'TWI31G0368' => 'twi', 'TWI32G0464' => 'twi', 'TWI36G1374' => 'twi', 'TWI60G0350' => 'twi', 'TWI79G0614' => 'twi', 'unitig_22.g6932' => 'ugi', 'unitig_27.g25115' => 'ugi', 'vmacro00098' => 'vma', 'vmacro01188' => 'vma', 'vmacro02548' => 'vma', 'vmacro02549' => 'vma', 'vmacro03226' => 'vma', 'vmacro12520' => 'vma', 'vmacro12522' => 'vma', 'vmacro14382' => 'vma', 'vmacro23023' => 'vma', 'VMungo0251G0590' => 'vmu', 'VMungo0251G3548' => 'vmu', 'VMungo0251G3753' => 'vmu', 'VMungo1080G1504' => 'vmu', 'VMungo1215G3448' => 'vmu', 'Zm00001eb000860' => 'zma', 'Zm00001eb090530' => 'zma', 'Zm00001eb143480' => 'zma', 'Zm00001eb192060' => 'zma', 'Zm00001eb271590' => 'zma', 'Zm00001eb335420' => 'zma', 'Zm00001eb364820' => 'zma', 'Zm00001eb375520' => 'zma', 'Zm00001eb382000' => 'zma', 'Zm00001eb386960' => 'zma', 'Zm00001eb404080' => 'zma', 'Zm00001eb421670' => 'zma', 'Zm00001eb424300' => 'zma' ) $gf_id = 'HOM05D000929' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000929' ) $data_identifier = 'HOM05D000929' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 10, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 7, 'bca' => (int) 13, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 3, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 5, 'lal' => (int) 17, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 3, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 10, 'psa' => (int) 13, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 20, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424300' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1